Dr Sophia Tsoka Dr Sophia Tsoka Academics Supervisors Reader in Bioinformatics Research subject areas Computer science Contact details +44 020 7848 1056 sophia.tsoka@kcl.ac.uk
Enriched circulating and tumor-resident TGF-β+ regulatory B cells in patients with melanoma promote FOXP3+ Tregs Harris, R., Willsmore, Z., Laddach, R., Crescioli, S., Chauhan, J., Cheung, A., Black, A., Geh, J. L. C., MacKenzie Ross, A., Healy, C., Tsoka, S., Spicer, J., Lacy, K. E. & Karagiannis, S. N., 28 Jul 2022, In: OncoImmunology. 11, 1, 2104426. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1080/2162402X.2022.2104426 Multi-Omic Data Integration and Feature Selection for Survival-based Patient Stratification via Supervised Concrete Autoencoders Avelar, P. H. D. C., Laddach, R., Karagiannis, S., Wu, M. & Tsoka, S., 21 Jun 2022. Research output: Working paper/Preprint › Preprint Multi-Omic Data Integration and Feature Selection for Patient Stratification via Supervised Concrete Autoencoders Da Costa Avelar, P., Laddach, R., Karagiannis, S. N., Wu, M. & Tsoka, S., 2022, (Accepted/In press) Lecture Notes in Computer Science. Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review. DOIs: https://doi.org/10.48550/arXiv.2206.10699 Novel drug-target interactions via link prediction and network embedding Amiri Souri, E., Laddach, R., Karagiannis, S. N., Papageorgiou, L. G. & Tsoka, S., 4 Apr 2022, In: BMC Bioinformatics. 23, 1, p. 121 121. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1186/s12859-022-04650-w Radiomic Assessment of Oesophageal Adenocarcinoma. A Critical Review of 18F-FDG PET/CT, PET/MRI and CT O'Shea, R., Rookyard, C., Withey, S., Cook, G., Tsoka, S. & Goh, V., 28 May 2022, (Accepted/In press) In: Insights into imaging. Research output: Contribution to journal › Article › peer-review Genetic variation influencing DNA methylation provides insights into molecular mechanisms regulating genomic function MuTHER Consortium, Jan 2022, In: Nature genetics. 54, 1, p. 18-29 12 p. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1038/s41588-021-00969-x Translational aspects of biologicals: monoclonal antibodies and antibody-drug conjugates as examples Karagiannis, S. N., Hoffmann, M., Nakamura, M., Crescioli, S., Bax, H. J., Chenoweth, A., Cheung, A., Tsoka, S., Spicer, J., Lacy, K. E. & Thurston, D., 15 Jul 2021, Principles of Translational Science in Medicine Principles of Translational Science in Medicine: From Bench to Bedside. Wehling, M. (ed.). 3rd ed. Academic Press, p. 329-350 Research output: Chapter in Book/Report/Conference proceeding › Chapter. DOIs: https://doi.org/, https://www.sciencedirect.com/science/article/pii/B9780128204931000313 Sparse regression in cancer genomics: comparing variable selection and predictions in real world data O'Shea, R., Tsoka, S., Cook, G. & Goh, V., 9 Oct 2021, (E-pub ahead of print) In: Cancer informatics. Research output: Contribution to journal › Article › peer-review Cancer Grade Model: a multi-gene machine learning-based risk classification for improving prognosis in breast cancer Amiri Souri, E., Chenoweth, A., Cheung, A., Karagiannis, S. N. & Tsoka, S., 31 Aug 2021, In: British Journal of Cancer; Nature Research. 125, 5, p. 748-758 11 p. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1038/s41416-021-01455-1 Tumor-Infiltrating B Lymphocyte Profiling Identifies IgG-Biased, Clonally Expanded Prognostic Phenotypes In Triple-Negative Breast Cancer Harris, R. J., Cheung, A., Ng, J. C. F., Laddach, R., Chenoweth, A. M., Crescioli, S., Fittall, M., Dominguez-Rodriguez, D., Roberts, J., Levi, D., Liu, F., Alberts, E., Quist, J., Santaolalla, A., Pinder, S. E., Gillett, C., Hammar, N., Irshad, S., van Hemelrijck, M., Dunn-Walters, D. K. & 7 others, Fraternali, F., Spicer, J. F., Lacy, K. E., Tsoka, S., Grigoriadis, A., Tutt, A. N. J. & Karagiannis, S. N., 15 Aug 2021, In: Cancer Research. 81, 16, p. 4290-4304 15 p. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1158/0008-5472.CAN-20-3773, https://doi.org/10.1158/0008-5472.CAN-20-3773 View all publications