Dr Sophia Tsoka Dr Sophia Tsoka Academics Supervisors Reader in Bioinformatics Research subject areas Computer science Contact details +44 020 7848 1056 sophia.tsoka@kcl.ac.uk
Folate receptor alpha in ovarian cancer tissue and patient serum is associated with disease burden and treatment outcomes Bax, H., Chauhan, J., Stavraka, C., Santaolalla, A., Osborn, G., Khiabany, A., Grandits, M., Lopez-Abente Muroz, J., Gusmao Ferreira, L. C., Chan Wah Hak, C., Robinson, A., Pope, A., Woodman, N., Naceur-Lombardelli, C., Malas, S., Nakamura, M., Coumbe, J. E. M., Laddach, R., Mele, S., Crescioli, S., & 16 othersBlack, A., Lombardi, S., Canevari, S., Figini, M., Sayasneh, A., Tsoka, S., FitzGerald, K., Gillett, C., Pinder, S., Van Hemelrijck, M., Kristeleit, R., Ghosh, S., Montes, A., Spicer, J., Karagiannis, S. N. & Josephs, D., 19 Nov 2022, (E-pub ahead of print) In: British Journal of Cancer. 12 p., https://doi.org/10.1038/s41416-022-02031-x. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1038/s41416-022-02031-x Influencing tumor-associated macrophages in malignant melanoma with monoclonal antibodies Adams, R., Osborn, G., Mukhia, B., Laddach, R., Willsmore, Z., Chenoweth, A., Geh, J. L. C., MacKenzie Ross, A. D., Healy, C., Barber, L., Tsoka, S., Sanz-Moreno, V., Lacy, K. E. & Karagiannis, S. N., 3 Oct 2022, In: OncoImmunology. 11, 1, p. 2127284 17 p., 2127284. Research output: Contribution to journal › Review article › peer-review. DOIs: https://doi.org/10.1080/2162402X.2022.2127284 Design and manufacture of a lyophilised faecal microbiota capsule formulation to GMP standards Zain, N. M. M., ter Linden, D., Lilley, A. K., Royall, P. G., Tsoka, S., Bruce, K. D., Mason, A. J., Hatton, G. B., Allen, E., Goldenberg, S. D. & Forbes, B., Oct 2022, In: Journal of Controlled Release. 350, p. 324-331 8 p. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1016/j.jconrel.2022.08.012 Enriched circulating and tumor-resident TGF-β+ regulatory B cells in patients with melanoma promote FOXP3+ Tregs Harris, R. J., Willsmore, Z., Laddach, R., Crescioli, S., Chauhan, J., Cheung, A., Black, A., Geh, J. L. C., MacKenzie Ross, A. D., Healy, C., Tsoka, S., Spicer, J., Lacy, K. E. & Karagiannis, S. N., 28 Jul 2022, In: OncoImmunology. 11, 1, p. 2104426 2104426. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1080/2162402X.2022.2104426 Multi-Omic Data Integration and Feature Selection for Survival-based Patient Stratification via Supervised Concrete Autoencoders Avelar, P. H. D. C., Laddach, R., Karagiannis, S., Wu, M. & Tsoka, S., 21 Jun 2022. Research output: Working paper/Preprint › Preprint Multi-Omic Data Integration and Feature Selection for Patient Stratification via Supervised Concrete Autoencoders Da Costa Avelar, P., Laddach, R., Karagiannis, S. N., Wu, M. & Tsoka, S., 2022, (Accepted/In press) Lecture Notes in Computer Science. Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review. DOIs: https://doi.org/10.48550/arXiv.2206.10699 Novel drug-target interactions via link prediction and network embedding Amiri Souri, E., Laddach, R., Karagiannis, S. N., Papageorgiou, L. G. & Tsoka, S., 4 Apr 2022, In: BMC Bioinformatics. 23, 1, p. 121 121. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1186/s12859-022-04650-w Radiomic Assessment of Oesophageal Adenocarcinoma. A Critical Review of 18F-FDG PET/CT, PET/MRI and CT O'Shea, R., Rookyard, C., Withey, S., Cook, G., Tsoka, S. & Goh, V., 28 May 2022, (Accepted/In press) In: Insights into imaging. Research output: Contribution to journal › Article › peer-review Genetic variation influencing DNA methylation provides insights into molecular mechanisms regulating genomic function MuTHER Consortium, Jan 2022, In: Nature genetics. 54, 1, p. 18-29 12 p. Research output: Contribution to journal › Article › peer-review. DOIs: https://doi.org/10.1038/s41588-021-00969-x Translational aspects of biologicals: monoclonal antibodies and antibody-drug conjugates as examples Karagiannis, S. N., Hoffmann, M., Nakamura, M., Crescioli, S., Bax, H. J., Chenoweth, A., Cheung, A., Tsoka, S., Spicer, J., Lacy, K. E. & Thurston, D., 15 Jul 2021, Principles of Translational Science in Medicine: From Bench to Bedside, Third Edition. Wehling, M. (ed.). 3rd ed. Academic Press, p. 329-350 22 p. Research output: Chapter in Book/Report/Conference proceeding › Chapter. DOIs: https://doi.org/10.1016/B978-0-12-820493-1.00031-3 View all publications