Dr Sophia Tsoka Academics Reader in Bioinformatics Research subject areas Computer science Contact details +44 020 7848 1056 sophia.tsoka@kcl.ac.uk
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets Janowska-Sejda, E. I., Lysenko, A., Urban, M., Rawlings, C., Tsoka, S. & Hammond-Kosack, K. E., 6 Dec 2019, In : Frontiers in microbiology. 10, 2721. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.3389/fmicb.2019.02721 Network-based piecewise linear regression for QSAR modelling Silva, J. C., Papageorgiou, L. G. & Tsoka, S., 18 Oct 2019, In : Journal of Computer-Aided Molecular Design. 33, 9, p. 831-844 14 p. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1007/s10822-019-00228-6 Microbe-host interplay in atopic dermatitis and psoriasis Fyhrquist, N., Muirhead, G. S., Prast-Nielsen, S., Jeanmougin, M., Olah, P., Skoog, T., Jules-Clement, G., Feld, M., Barrientos-Somarribas, M., Sinkko, H., van den Bogaard, E. H., Zeeuwen, P. L. J. M., Rikken, G., Schalkwijk, J., Niehues, N., Däubener, W., Eller, S. K., Alexander, H., Pennino, D., Suomela, S. & 27 others, Tessas, I., Lybeck, E., Baran, A. M., Darban, H., Roopesh Singh, G., Gerstel, U., Jahn, K., Karisola, P., Yan, L., Hansmann, B., Katayama, S., Meller, S., Bylesjö, M., Hupé, P., Levi-Schaffer, F., Greco, D., Ranki, A., Schröder, J. M., Barker, J. N. W. N., Kere, J., Tsoka, S., Lauerma, A., Soumelis, V., Nestle, F. O., Homey, B., Andersson, B. & Alenius, H., 16 Oct 2019, In : Nature Communications. 10, 1, 4703. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1038/s41467-019-12253-y IgE re-programs alternatively-activated human macrophages towards pro-inflammatory anti-tumoural states Pellizzari, G., Hoskin, C. M., Crescioli, S., Mele, S., Gotovina, J., Chiaruttini, G., Bianchini, R., Ilieva, K. M., Bax, H. J., Papa, S. E., Lacy, K. E., Jensen-Jarolim, E., Tsoka, S., Josephs, D. H., Spicer, J. F. & Karagiannis, S. N., 1 May 2019, In : EBioMedicine. 43, p. 67-81 15 p., EBIOM2073. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1016/j.ebiom.2019.03.080 Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma Nakamura, M., Bax, H. J., Scotto, D., Amiri Souri, E., Sollie, S., Harris, R. J., Hammar, N., Walldius, G., Winship, A., Ghosh, S., Montes, A., Spicer, J. F., Van Hemelrijck, M., Josephs, D. H., Lacy, K. E., Tsoka, S. & Karagiannis, S. N., 3 Jun 2019, In : OncoImmunology. 8, 6, e1593811 . Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1080/2162402X.2019.1593811 Optimal Piecewise Linear Regression Algorithm for QSAR Modelling Cardoso-Silva, J., Papadatos, G., Papageorgiou, L. G. & Tsoka, S., 24 Sep 2018, In : Molecular Informatics. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1002/minf.201800028 Reactome Pengine: a web-logic API to the Homo sapiens reactome Neaves, S. R., Tsoka, S. & Millard, L. A. C., 30 Mar 2018, In : BIOINFORMATICS. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1093/bioinformatics/bty181 An immunologically relevant rodent model demonstrates safety of therapy using a tumour-specific IgE Josephs, D. H., Nakamura, M., Bax, H. J., Dodev, T. S., Muirhead, G., Saul, L., Karagiannis, P., Ilieva, K. M., Crescioli, S., Gazinska, P., Woodman, N., Lomardelli, C., Kareemaghay, S., Selkirk, C., Lentfer, H., Barton, C., Canevari, S., Figini, M., Downes, N., Dombrowicz, D. & 8 others, Corrigan, C. J., Nestle, F. O., Jones, P. S., Gould, H. J., Blower, P. J., Tsoka, S., Spicer, J. F. & Karagiannis, S. N., 1 Dec 2018, In : Allergy. 73, 12, p. 2328-2341 14 p. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1111/all.13455 Chondroitin sulfate proteoglycan 4 and its potential as an antibody immunotherapy target across different tumor types Ilieva, K. M., Cheung, A., Mele, S., Chiaruttini, G., Crescioli, S., Griffin, M., Nakamura, M., Spicer, J. F., Tsoka, S., Lacy, K. E., Tutt, A. N. J. & Karagiannis, S. N., 10 Jan 2018, In : Frontiers in Immunology. 8, JAN, p. 1911 15 p., 1911. Research output: Contribution to journal - Review article. DOIs: https://doi.org/10.3389/fimmu.2017.01911https://doi.org/10.3389/fimmu.2017.01911 Organizational principles of the Reactome human BioPAX model using graph theory methods Kittas, A., Bennett, L., Hermjakob, H. & Tsoka, S., 1 Dec 2016, In : Journal of complex Networks. 4, 4, p. 604-615 12 p. Research output: Contribution to journal - Article. DOIs: https://doi.org/10.1093/comnet/cnw003 View all publications