The SEISMIC facility houses several items of equipment that can be used to isolate single cells or even sub-cellular compartments under microscope observation. We can provide analysis of the isolated material using mass spectrometry.
Our facility houses a recently commercialised single-cell sampling system from Yokogawa Corporation (see the details of the SS2000 for further information). The technology enables single, live cells or their sub-cellular components to be extracted into a capillary under microscope observation. We can use fluorescence to visualise specific constituents of a cell or expression of particular markers (e.g. mitochondria, nucleus, lipid droplets, GFP-labelled proteins). The extracted cell material can be eluted into plates, surfaces or vials for downstream analysis, e.g. mass spectrometry, transcriptomics etc.
We can provide mass spectrometry analysis for drugs, metabolites and lipids, and we have established collaborations to detect other analytes (e.g. proteins, transcripts). We have a pump priming scheme, which can be used to gain proof of concept data for funding applications. This service will be free to BBSRC researchers until 2026.
You can download our access form - please get in touch to discuss with us your requirements with us so we can help you to design your experiments. You can download our sample requirements here.
We provide expert advice and bespoke service for single cell mass spectrometry and sub-cellular analysis. This includes experimental design and conceptualisation, sample preparation, measurement execution, data analysis and interpretation. We have developed unique data processing pipelines, which output publication quality data and statistics. We offer technical consultation and ongoing support to both research and commercial users, ensuring high-quality data outputs.
We have a range of systems for single cell and organelle isolation, as well as analysis, including:
Related equipment

ThermoFisher Orbitrap Astral Mass Spectrometer
Designed to achieve the next generation of breakthroughs with upgraded hardware and software capabilities to deliver increased flexibility, faster throughput,.

Thermo Orbitrap Excedion Pro Mass Spectrometer
The Thermo Scientific Orbitrap Excedion Pro Hybrid Mass Spectrometer provides advanced performance and precision to help you achieve groundbreaking discoveries.

Thermo Scientific Vanquish Neo UHPLC system
The Thermo Scientific Vanquish Neo UHPLC system delivers maximum performance 24/7 for reproducible nano-, capillary-, and micro-flow LC-MS.

Yokogawa Single Cellome System 2000
The Single Cellome™ System 2000 is a system that automatically samples specific regions of cells or whole cells at the single-cell level

iotaSciences isoPick
The isoPick transfers verified single cells from ultra-low volume culture chambers (GRIDs) automatically into 96-well plates
Further information
- University of Surrey leads new cancer research - BBC News
- Breaking New Ground in Single-Cell Lipidomics | Technology Networks
- SS2000 Collaboration Project with Surrey University - Life Innovation Blog
- Single-cell multi-omics and oncological potential | pharmaphorum
- Lipidomics Insight: Single-Cell Analysis Using Liquid ...
- There's a new way to see inside a single cancer cell
- New single-cell lipidomics method may unlock cancer treatments
- Towards sub-cellular mass spectrometry omics: The SEISMIC facility for spatially resolved...
- von Geritchten, J.; Saunders, K; Spick, M; Bailey, M. J. Single-cell lipidomics: performance evaluation across four liquid chromatography mass spectrometry (LC-MS) systems Analyst, 2025,150, 4525-4534
- Saunders, K. D.; von Gerichten, J.; Deshpande, R.; Spick, M.; Bird, S.; Schettino, G.; Bolland, H.; Whetton, A.; Velliou, E.; Bailey, M. J. Single-Cell Lipidomics by LC-MS Interlaboratory Study Reveals the Impact of X-ray Irradiation on a Pancreatic Cancer Cell Line and Its Bystanders. Analytical Chemistry 2025 97 25 13532-13541
- Kontiza, A.; von Gerichten, J.; Spick, M.; Fraser, E.; Costa, C.; Saunders, K. D.; Whetton, A. D.; Newman, C. F.; Bailey, M. J. Single-cell lipidomics: protocol development for reliable cellular profiling using capillary sampling. Analyst 2025, 150 (7), 1261-1270.
- Von Gerichten, J.; Saunders, K. D.; Kontiza, A.; Newman, C. F.; Mayson, G.; Beste, D. J.; Velliou, E.; Whetton, A. D.; Bailey, M. J. Single-cell untargeted lipidomics using liquid chromatography and data-dependent acquisition after live cell selection. Analytical chemistry 2024, 96 (18), 6922-6929.
- Kontiza, A.; Gerichten, J. v.; Saunders, K. D.; Spick, M.; Whetton, A. D.; Newman, C. F.; Bailey, M. J. Single-Cell Lipidomics: An Automated and Accessible Microfluidic Workflow Validated by Capillary Sampling. Analytical chemistry 2024, 96 (44), 17594-17601.
- Saunders, K. D., et al. (2023). "Spatial single cell metabolomics: current challenges and future developments." Current opinion in chemical biology 75: 102327.
- Saunders, K. D., et al. (2023). "Single-Cell Lipidomics Using Analytical Flow LC-MS Characterizes the Response to Chemotherapy in Cultured Pancreatic Cancer Cells." Analytical Chemistry 95(39): 14727-14735.
- Lewis, H.-M., et al. (2023). "Nanocapillary sampling coupled to liquid chromatography mass spectrometry delivers single cell drug measurement and lipid fingerprints." Analyst 148(5): 1041-1049.
- von Gerichten, J.; Belsey, N. A.; Tyagi, V.; Newstead, C.; Costa, C.; Schneider, E.; Couture, P.; Palitsin, V.; Dexter, A.; Camarena, D. E. M. Correlative multimodal imaging of tissue structure, metabolome and elemental distribution using stimulated Raman scattering, desorption electrospray ionisation and MeV ion beam analysis. Analytica Chimica Acta 2025, 344272.
- von Gerichten, J.; Saunders, K.; Bailey, M. J.; Gethings, L. A.; Onoja, A.; Geifman, N.; Spick, M. Challenges in lipidomics biomarker identification: avoiding the pitfalls and improving reproducibility. Metabolites 2024, 14 (8), 461.
- Davison, C.; Pascoe, J.; Bailey, M.; Beste, D. J.; Felipe-Sotelo, M. Single cell–inductively coupled plasma–mass spectrometry (SC-ICP-MS) reveals metallic heterogeneity in a macrophage model of infectious diseases. Analytical and bioanalytical chemistry 2024, 416 (29), 6945-6955.
- Davison, C., et al. (2023). "Expanding the boundaries of atomic spectroscopy at the single-cell level: critical review of SP-ICP-MS, LIBS and LA-ICP-MS advances for the elemental analysis of tissues and single cells." Analytical and bioanalytical chemistry 415(28): 6931-6950.
We provide expert advice and bespoke service for single cell mass spectrometry and sub-cellular analysis. This includes experimental design and conceptualisation, sample preparation, measurement execution, data analysis and interpretation. We have developed unique data processing pipelines, which output publication quality data and statistics. We offer technical consultation and ongoing support to both research and commercial users, ensuring high-quality data outputs.
Facility staff
Affiliated academics
We have a range of systems for single cell and organelle isolation, as well as analysis, including:
Related equipment

ThermoFisher Orbitrap Astral Mass Spectrometer
Designed to achieve the next generation of breakthroughs with upgraded hardware and software capabilities to deliver increased flexibility, faster throughput,.

Thermo Orbitrap Excedion Pro Mass Spectrometer
The Thermo Scientific Orbitrap Excedion Pro Hybrid Mass Spectrometer provides advanced performance and precision to help you achieve groundbreaking discoveries.

Thermo Scientific Vanquish Neo UHPLC system
The Thermo Scientific Vanquish Neo UHPLC system delivers maximum performance 24/7 for reproducible nano-, capillary-, and micro-flow LC-MS.

Yokogawa Single Cellome System 2000
The Single Cellome™ System 2000 is a system that automatically samples specific regions of cells or whole cells at the single-cell level

iotaSciences isoPick
The isoPick transfers verified single cells from ultra-low volume culture chambers (GRIDs) automatically into 96-well plates
Further information
- University of Surrey leads new cancer research - BBC News
- Breaking New Ground in Single-Cell Lipidomics | Technology Networks
- SS2000 Collaboration Project with Surrey University - Life Innovation Blog
- Single-cell multi-omics and oncological potential | pharmaphorum
- Lipidomics Insight: Single-Cell Analysis Using Liquid ...
- There's a new way to see inside a single cancer cell
- New single-cell lipidomics method may unlock cancer treatments
- Towards sub-cellular mass spectrometry omics: The SEISMIC facility for spatially resolved...
- von Geritchten, J.; Saunders, K; Spick, M; Bailey, M. J. Single-cell lipidomics: performance evaluation across four liquid chromatography mass spectrometry (LC-MS) systems Analyst, 2025,150, 4525-4534
- Saunders, K. D.; von Gerichten, J.; Deshpande, R.; Spick, M.; Bird, S.; Schettino, G.; Bolland, H.; Whetton, A.; Velliou, E.; Bailey, M. J. Single-Cell Lipidomics by LC-MS Interlaboratory Study Reveals the Impact of X-ray Irradiation on a Pancreatic Cancer Cell Line and Its Bystanders. Analytical Chemistry 2025 97 25 13532-13541
- Kontiza, A.; von Gerichten, J.; Spick, M.; Fraser, E.; Costa, C.; Saunders, K. D.; Whetton, A. D.; Newman, C. F.; Bailey, M. J. Single-cell lipidomics: protocol development for reliable cellular profiling using capillary sampling. Analyst 2025, 150 (7), 1261-1270.
- Von Gerichten, J.; Saunders, K. D.; Kontiza, A.; Newman, C. F.; Mayson, G.; Beste, D. J.; Velliou, E.; Whetton, A. D.; Bailey, M. J. Single-cell untargeted lipidomics using liquid chromatography and data-dependent acquisition after live cell selection. Analytical chemistry 2024, 96 (18), 6922-6929.
- Kontiza, A.; Gerichten, J. v.; Saunders, K. D.; Spick, M.; Whetton, A. D.; Newman, C. F.; Bailey, M. J. Single-Cell Lipidomics: An Automated and Accessible Microfluidic Workflow Validated by Capillary Sampling. Analytical chemistry 2024, 96 (44), 17594-17601.
- Saunders, K. D., et al. (2023). "Spatial single cell metabolomics: current challenges and future developments." Current opinion in chemical biology 75: 102327.
- Saunders, K. D., et al. (2023). "Single-Cell Lipidomics Using Analytical Flow LC-MS Characterizes the Response to Chemotherapy in Cultured Pancreatic Cancer Cells." Analytical Chemistry 95(39): 14727-14735.
- Lewis, H.-M., et al. (2023). "Nanocapillary sampling coupled to liquid chromatography mass spectrometry delivers single cell drug measurement and lipid fingerprints." Analyst 148(5): 1041-1049.
- von Gerichten, J.; Belsey, N. A.; Tyagi, V.; Newstead, C.; Costa, C.; Schneider, E.; Couture, P.; Palitsin, V.; Dexter, A.; Camarena, D. E. M. Correlative multimodal imaging of tissue structure, metabolome and elemental distribution using stimulated Raman scattering, desorption electrospray ionisation and MeV ion beam analysis. Analytica Chimica Acta 2025, 344272.
- von Gerichten, J.; Saunders, K.; Bailey, M. J.; Gethings, L. A.; Onoja, A.; Geifman, N.; Spick, M. Challenges in lipidomics biomarker identification: avoiding the pitfalls and improving reproducibility. Metabolites 2024, 14 (8), 461.
- Davison, C.; Pascoe, J.; Bailey, M.; Beste, D. J.; Felipe-Sotelo, M. Single cell–inductively coupled plasma–mass spectrometry (SC-ICP-MS) reveals metallic heterogeneity in a macrophage model of infectious diseases. Analytical and bioanalytical chemistry 2024, 416 (29), 6945-6955.
- Davison, C., et al. (2023). "Expanding the boundaries of atomic spectroscopy at the single-cell level: critical review of SP-ICP-MS, LIBS and LA-ICP-MS advances for the elemental analysis of tissues and single cells." Analytical and bioanalytical chemistry 415(28): 6931-6950.
Partners

ThermoFisher Scientific

Biotechnology & Biological Sciences Research Council

The Engineering and Physical Sciences Research Council (EPSRC)
GlaxoSmithKline

University of Nottingham

National Physics Laboratory

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