Dr Dottorini explains: "I aim to identify key drivers and mechanisms underlying the emergence, evolution and transmission of new genetic variants of resistant pathogens and novel AMR traits, while exploring how host, co-infections, climate, ecological and environmental interactions influence genome evolution - and ultimately the dynamics of infection and AMR.
Grounded in a One Health philosophy, which recognises that human, animal and environmental health are deeply intertwined, my data analysis solutions recognise each investigated setting as a network of interconnected systems and environments, observable across multiple scales - from molecules to entire populations. By leveraging diverse data sources, including omics, clinical records, environmental metrics, social variables and climate data, I adopt a holistic approach to studying AMR. This involves examining complex networks of interactions such as horizontal gene transfer, mobile genetic elements (MGEs), microbiome composition, and host-environment interactions.
"Co-infections - where a patient carries more than one pathogen simultaneously - are a central focus of my work, as they often exacerbate AMR, influencing host-pathogen dynamics, immune responses and treatment strategies. AMR arises through resistance gene exchange via MGEs, mutations and microbiome interactions, compounded by complex anthropogenic and ecological factors. To navigate these intricate networks, I employ cutting-edge bioinformatics, AI, digital twinning (the construction of computational replicas of biological systems) and big-data technologies to synthesise insights, correlations and causality across these domains.
"In addition to advancing the understanding of AMR mechanisms, my research supports the development of innovative bioinformatics and AI-powered technologies to drive advancements in diagnostics, surveillance, monitoring, early warning systems and treatment selection.