From wet lab bench to cancer bioinformatics
Anita’s route into AI-powered cancer care didn’t begin with computer science. She trained as a cancer biologist at the Ludwig Institute for Cancer Research, working on the molecular side of breast tumours. Then came a pause: five years focused on raising her children, combined with part-time work that nudged her, step by step, towards the computer lab.
It was exactly the moment bioinformatics was taking off. "In those five years I became a computer scientist", she recalls, swapping pipettes for Python. What began as a modest patient donation to support a single PhD student in her team grew, over two decades, into a large research programme on lymph-node patterns in breast cancer. That initial gift now underpins a growing team of researchers, with support from major funders, in close collaboration with Dr Dinis Caldao at the Francis Crick Institute.
Mobilising AI models in the fight against cancer requires thorough and comprehensive training data. Anita’s team has built the GRAPE repository, containing more than 1,500 digitised whole slide images of lymph nodes from nearly 200 breast cancer patients treated at Guy’s and St Thomas Foundation Trust and other hospitals across the globe. Next to GRAPE sits OASIS, a retrospective collection of nearly 1,500 whole slide images of normal breast tissue for the purpose of comparison, and built to improve cancer risk assessment in women with germline mutations.
Foundational work at this level lets other teams ask new questions. A lab in another country that has no archive of its own can now explore how immune cells cluster in lymph nodes or how normal breast tissue differs in high-risk groups, because Anita’s team has already done the hard work of curating, digitising and sharing. As Anita puts it, there is a deliberate shift from individual projects to 'shared assets' that can keep generating insights long after the original papers in a research project have been published.